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SABmark--a benchmark for sequence alignment that covers the entire known fold space

Publication Type:

Journal Article

Authors:

Van,Walle,I; Lasters,I.; Wyns,L.

Source:

Volume 21, Issue 7, p.1267 - 1268 (2005)

URL:

PM:15333456

Keywords:

Algorithms; Amino Acid Sequence; Benchmarking; methods; Molecular Sequence Data; Protein Folding; Proteins; analysis; chemistry; classification; Sequence Alignment; Sequence Analysis; Protein; Sequence Homology; Amino Acid; Software

Abstract:

The Sequence Alignment Benchmark (SABmark) provides sets of multiple alignment problems derived from the SCOP classification. These sets, Twilight Zone and Superfamilies, both cover the entire known fold space using sequences with very low to low, and low to intermediate similarity, respectively. In addition, each set has an alternate version in which unalignable but apparently similar sequences are added to each problem

Notes:

DA - 20050324
IS - 1367-4803 (Print)
LA - eng
PT - Evaluation Studies
PT - Journal Article
PT - Research Support, Non-U.S. Gov't
RN - 0 (Proteins)
SB - IM